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User Alexander Gorelik - Bioinformatics Stack Exchange Q A for researchers, developers, students, teachers, and end users interested in bioinformatics
User Arunabh - Bioinformatics Stack Exchange Q A for researchers, developers, students, teachers, and end users interested in bioinformatics
How to transfer the gene ontology terms from one genome to another I have annotated a genome using RNA-seq and protein data, and now I want to assign gene ontology terms to the genes InterproScan, eggnog-mapper, and deepGoplus failed in my HPC; but, there are rel
PRS across three target cohorts using UK Biobank betas: use all 20 . . . I have individual-level genotyping for gt;20 cohorts from a multi-cohort project For a focused sub-study, I plan to compute polygenic risk scores (PRS) in three target cohorts and then use the PR
Newest kegg Questions - Bioinformatics Stack Exchange Q A for researchers, developers, students, teachers, and end users interested in bioinformatics
Extract lines from a file based on a range of coordinates listed on a . . . I would be highly appreciated to have a script able to perform the following operation: Only extract scaffold_1 lines from file1 vcf in which POS number (column 2) falls within column 2 and column 3
public databases - PANTHER FUNCTIONAL CLASSIFICATION in R . . . Does anyone know of a way to programmatically get panther protein class terms and IDs for a gene list, in a way that the classification structure is preserved (PARENT CLASS + CHILD CLASS)? i e For a
phylogenetics - Understanding the Relationship Between ConClave Score . . . I am currently analyzing my nanopore metagenomic sequencing data After demultiplexing and trimming, I am using the KMA (k-mer alignment) aligner by Clausen et al (https: bmcbioinformatics
How to convert bed to wig file! - Bioinformatics Stack Exchange I was wondering how can I convert bed file to wig file I have several bed files which look like head EE88324 shortlong frag bed chr1 10003 10117 1 chr1 10003 10138 1 chr1 10003