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Vakser Lab - GRAMM Web GRAMM systematically maps the intermolecular energy landscape by predicting a spectrum of docking poses corresponding to stable (deep energy minima) and transient (shallow minima) protein interactions More information on the GRAMM methodology is on our laboratory website
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Vakser Lab - GRAMM Web For free docking, the GRAMM algorithm calculates the energy of the interaction between two proteins in different orientations based on geometric fit This score is correlated with the van der Waals interaction energy