deepmind-research enformer README. md at master - GitHub The full sonnet module is defined in enformer py called Enformer See enformer-training ipynb on how to train the model on Basenji2 data and how to load the pre-trained weights into the Enformer module for fine-tuning
enformer-usage. ipynb - Colab See the License for the specific language governing permissions and limitations under the License This colab showcases the usage of the Enformer model published in "Effective gene expression
Predicting gene expression with AI - Google DeepMind Based on Transformers, our new Enformer architecture advances genetic research by improving the ability to predict how DNA sequence influences gene expression
EleutherAI enformer-official-rough · Hugging Face Enformer is a neural network architecture based on the Transformer that led to greatly increased accuracy in predicting gene expression from DNA sequence We refer to the paper published in Nature for details
Effective gene expression prediction from sequence by . . . - PubMed Here, we report substantially improved gene expression prediction accuracy from DNA sequences through the use of a deep learning architecture, called Enformer, that is able to integrate information from long-range interactions (up to 100 kb away) in the genome
Enformer — crested The Enformer model is a large model trained on bulk ENCODE and FANTOM DNase, ChIP-seq, and CAGE data from a wide variety of human and mouse tissues It predicts 896 bins of 128bp, corresponding to the core 114688 bp of the input sequence