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- Re: [PyMOL] rms_cur, rms, fit - No atoms selected
Now I want to get the rms value without superimposing: > rms_cur lc, lr but it does not work: ExecutiveRMS-Error: No atoms selected It also does not work with rms or fit commands, although it works with align: > align lc, lr Match: read scoring matrix
- measure - University of Illinois Urbana-Champaign
rmsf selection [first first] [last last] [step step]: Returns the root mean square position fluctuation for each selected atom in the selected frames If no first, last, or step values are provided the calculation will be done for all frames
- Vmd rmsd calculation error. how to solve - ResearchGate
Hi, I am trying to align two protein complexes - structure before the start of simulation and the structure isolated at 1ns simulation despite having the same number of atoms, I have been
- [PyMOL] fit: ExecutiveRMS-Error: No atoms selected.
Subject: [PyMOL] fit: ExecutiveRMS-Error: No atoms selected Hello, I am using pymol version 0 99 rc6 When trying to superimpose 2 almost identical structures (the one is an energy-minimized version of the other, same number of residues and atoms), I PyMOL>fit mini, ori ExecutiveRMS-Error: No atoms selected
- 原子选择问题，无法进行原子选择。 - 分子模拟 (Molecular Modeling) - 计算化学公社
大家好，我想请教一下，在VMD中导入pdb文件，想要对不同原子类型呈现不同的形态，但是在进行原子选择时，始终出现如下的问题，想请教一下这是那个地方除了问题呢？谢谢 ,计算化学公社
- namd-l: Re: atom selection error - University of Illinois Urbana-Champaign
the error is measure fit: no atoms selected the segname of my systems are ION,P1,P2,WT1,WT2 when i made equvalent atom on and select atom BAS,still i have obtained the same erorr Ok, so what atom selections are you using?
- Thread: Re: [PyMOL] fit: ExecutiveRMS-Error: No atoms selected.
Re: [PyMOL] fit: ExecutiveRMS-Error: No atoms selected From: Warren D <wa @de > - 2006-06-09 15:47:15 Pascal, "ori" may be mapping to the "origin" selection operator instead of your = structure
- RMS Fit and Alignment - VMD Users guide NAMD - 1Library
The best-fit alignment is done in two steps The first is to compute the 4×4 matrix transformation that takes one set of coordinates onto the other This is done with the measure fit command Assuming the same selections as before: set transformation_matrix [measure fit $sel1 $sel2] Info) {0 971188 0 00716391 0 238206 -13 2877}
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