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- AutoDock Vina
Existing projects using AutoDock Vina there include those targeting AIDS, Malaria, Leishmaniasis and Schistosomiasis Some of these projects average over 50 years worth of computation per day Average time per receptor-ligand pair on the test set “AutoDock” refers to AutoDock 4, and “Vina” to AutoDock Vina 1
- Downloads – AutoDock Vina
Download NOTE: The latest stable version of AutoDock Vina can be downloaded from the GitHub repository Older versions are available here OS Files Installation instructions autodock_vina_1_1_2_linux_x86 tgz See instructions Linux
- Manual – AutoDock Vina
What is the difference between AutoDock Vina and AutoDock 4? AutoDock 4 (and previous versions) and AutoDock Vina were both developed in the Molecular Graphics Lab at The Scripps Research Institute AutoDock Vina inherits some of the ideas and approaches of AutoDock 4, such as treating docking as a stochastic global opimization of the scoring
- Tutorial – AutoDock Vina
Vina Video Tutorial This tutorial demonstrates molecular docking of imatinib using Vina with AutoDock Tools and PyMOL Note that the version of Vina used in the tutorial is now old, so some differences are unavoidable Specifically, the program option "all" is now called "out", and the predicted binding affinity is different in the current version of the software
- License – AutoDock Vina
AutoDock Vina is released under the permissive Apache license, allowing flexible use for commercial or non-commercial purposes
- Questions – AutoDock Vina
Questions, problems or suggestions? FAQ! If you have a question, it may have already been answered Please check the FAQ first Otherwise, use one of the following: Email (recommended): Please subscribe to the AutoDock mailing list and send your messages there (Contact us, if you encounter difficulties subscribing or posting)
- Documentation – AutoDock Vina
Search for: Documentation mgl-admin 2019-03-16T15:02:02+00:00 Documentation Title
- SAMSON Forum | Autodock Vina Extended problem
If you get this score that is quite below than the best modes that Vina produces then you will need to increase the energy range to include this scoring I would suggest you try the following: set exhaustiveness to about 10, the number of modes to about 200, increase the energy range from the default 3 kcal mol to e g 6 kcal mol (to include
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