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- Human BLAT Search
BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more It may miss more divergent or shorter sequence alignments It will find perfect sequence matches of 20 bases
- BLAT (bioinformatics) - Wikipedia
BLAT (BLAST-like alignment tool) is a pairwise sequence alignment algorithm that was developed by Jim Kent at the University of California Santa Cruz (UCSC) in the early 2000s to assist in the assembly and annotation of the human genome [1]
- BLAT —The BLAST -Like Alignment Tool - PubMed Central (PMC)
Analyzing vertebrate genomes requires rapid mRNA DNA and cross-species protein alignments A new tool, BLAT, is more accurate and 500 times faster than popular existing tools for mRNA DNA alignments and 50 times faster for protein alignments at
- Kent Informatics - Tools to analyze the human genome - BLAT, In-Silico . . .
BLAT is commonly used to look up the location of a sequence in the genome or determine the exon structure of an mRNA molecule, but expert users can run large batch jobs and make internal parameter sensitivity changes by installing command-line BLAT on their own Linux server
- What are the differences between BLAST and BLAT? - Ensembl
BLAST (Basic Local Alignment Search Tool) finds regions of local similarity among nucleotide or amino acid sequences It compares a query sequence (DNA or protein) to a large set of sequences (the target) and calculates the statistical significance of matches
- UCSC Genome Bioinformatics: FAQ
Blat is commonly used to look up the location of a sequence in the genome or determine the exon structure of an mRNA, but expert users can run large batch jobs and make internal parameter sensitivity changes by installing command line Blat on their own Linux server
- The Genome Browser is protecting itself from bots. This will . . . - BLAT
The Genome Browser is protecting itself from bots This will just take a few seconds If you are a bot and were made for a research project, please contact us by email
- Performing a BLAT search | The Barbara K. Ostrom (1978) Bioinformatics . . .
BLAT stands for "Blast Like Alignment Tool" It is very fast and is designed to find nearly identical matches A description of blat is located at the bottom of this
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