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  • BEAST Software - Bayesian Evolutionary Analysis Sampling Trees | BEAST . . .
    What is BEAST? BEAST is a cross-platform program for Bayesian analysis of molecular sequences using MCMC It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models
  • FigTree | BEAST Documentation
    FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures
  • Downloading and installing BEAST on Windows | BEAST Documentation
    Downloading and installing BEAST on Windows BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees
  • First Tutorial | BEAST Documentation
    Running BEAST for the first time This tutorial will guide you through running BEAST and some of its accessory programs to do a simple phylogenetic analysis If you haven’t already, download and install BEAST following these instructions
  • BEAGLE | BEAST Documentation
    Using BEAGLE with BEAST BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics package It can make use of highly-parallel processors such as those in graphics processing units (GPUs) found in many PCs The current version of BEAGLE will only work with BEAST v1 6 or later Downloading and installing BEAGLE
  • Downloading and installing BEAST on UNIX Linux
    Downloading and installing BEAST on UNIX Linux BEAST is a software package for phylogenetic analysis with an emphasis on time-scaled trees
  • TreeAnnotator | BEAST Documentation
    TreeAnnotator is a program to summarize the information from a sample of trees produced by BEAST onto a single “target” tree The summary information includes the posterior probabilities of the nodes in the target tree, the posterior estimates and HPD limits of the node heights and (in the case of a relaxed molecular clock model) the rates
  • Estimating rates and dates from time-stamped sequences | BEAST . . .
    To inform BEAUti BEAST about the sampling dates of the sequences, go to the Tips menu and select the “Use tip dates” option By default all the taxa are assumed to have a date of zero (i e the sequences are assumed to be sampled at the same time; BEAST considers the present or most recent sampling time as time 0)


















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