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安裝中文字典英文字典辭典工具!
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- antiSMASH bacterial version - secondarymetabolites. org
Please be considerate in your use of antiSMASH Help us keep antiSMASH available for everybody by limiting yourself to 5 concurrent jobs Need to run more? See the antiSMASH install guide for instructions for getting your own antiSMASH installation
- antiSMASH Documentation
Welcome to the documentation of antiSMASH, the antibiotics Secondary Metabolite Analysis SHell The antiSMASH framework allows the detection of clusters of co-occurring biosynthesis genes in genomes, called B iosynthetic G ene C lusters ( BGCs )
- Installation - antiSMASH Documentation - secondarymetabolites. org
Download and extract the antiSMASH source (using 6 0 0 as an example, see above for other versions): wget https: dl secondarymetabolites org releases 6 0 0 antismash-6 0 0 tar gz tar -zxf antismash-6 0 0 tar gz Install antiSMASH (again, using 6 0 as an example, the name will match the download step):
- antiSMASH 5 antiSMASH database MANUAL - secondarymetabolites. org
antiSMASH can be installed locally on Linux computers or is available as Docker container or via bioconda (9)(also for Mac) An introduction to Genome Mining using antiSMASH
- Introduction - antiSMASH Documentation - secondarymetabolites. org
Based on profile hidden Markov models of genes that are specific for certain types of gene clusters, antiSMASH is able to accurately identify the gene clusters encoding secondary metabolites of all known broad chemical classes antiSMASH not only detects the gene clusters, but also offers detailed sequence analysis
- Glossary - antiSMASH Documentation - secondarymetabolites. org
antiSMASH uses some abbreviations internally and in outputs to refer to the different types of secondary metabolite clusters detected There are three strictness levels for cluster detection: strict, relaxed, and loose
- About - antiSMASH Documentation - secondarymetabolites. org
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences Nucleic Acids Res 39, W339-W346 doi: 10 1093 nar gkr466
- antiSMASH bacterial version - secondarymetabolites. org
See the install documentation for install instructions and other options of running your antiSMASH installation, including from pre-built Docker images Older releases antiSMASH 6
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