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- Introduction - PLUMED
PLUMED is a plugin that works with a large number of molecular dynamics codes (Codes interfaced with PLUMED ) It can be used to analyze features of the dynamics on-the-fly or to perform a wide variety of free energy methods
- 1. 1 初步学习PLUMED - CSDN博客
本文详细介绍了PLUMED插件在分子动力学模拟中的应用，包括元动力学训练、标准和回火元动力学模拟、自由能计算以及监控收敛性。
- PLUMED学习-分析 - 知乎
PLUMED提供许多操作用于计算网格上的函数值。 比如说，你计算了关于某个CV的FES（使用HISTOGRAM和CONVERT_TO_FES），会需要输出一系列离散点上的FES值。
- 加速采样软件plumed可视化界面工具PVST发布 - 分子模拟 (Molecular Modeling) - 计算化学公社
Plumed Visualization and Setup Tool（测试版 0 1 0）是一款为分子动力学模拟中加速采样而设计的linux平台下的可视化辅助工具，旨在降低新学者对加速采样方法的入门门槛。
- Releases · plumed plumed2 - GitHub
Developer release, including a preview of some of the features that will be available in PLUMED v2 10 For CHANGES, see changelog
- Welcome to PLUMED-TUTORIALS! | PLUMED-TUTORIALS by plumed-tutorials
What is PLUMED? PLUMED is a freely-available, open-source library that provides a wide range of different methods, such as enhanced-sampling algorithms, free-energy methods, and tools to analyze the vast amounts of data produced by MD simulations
- PLUMED — ASE documentation
Plumed is an open source library that allows implementing several kinds of enhanced sampling methods and contains a variety of tools to analyze data obtained from molecular dynamics simulations
- PLUMED学习总结 - 知乎
PLUMED一般用于处理周期性边界系统，但是有些分子是被周期边界分开的！ PLUMED中提供WHOLEMOLECULES命令，用户可以指定模拟中必须保持一体的分子。
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