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- pysam - An interface for reading and writing SAM files
Pysam is a python module that makes it easy to read and manipulate mapped short read sequence data stored in SAM BAM files It is a lightweight wrapper of the htslib C-API
- GitHub - pysam-developers pysam: Pysam is a Python package for reading . . .
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM BAM CRAM and VCF BCF files It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix
- PySAM - System Advisor Model - SAM
PySAM is a Python package that you can use in your Python code to make calls to the SAM Simulation Core (SSC) compute modules It provides access for tools for accessing SAM default values and input variables so you can create code directly in Python without having to run SAM's code generator
- Installing pysam — pysam 0. 23. 3 documentation
Installing pysam Pysam can be installed through conda, PyPI and from the repository The recommended way to install pysam is through conda bioconda Conda installation To install pysam in your current conda environment, type:
- pysam - Anaconda. org
Pysam is a Python module for reading and manipulating SAM BAM VCF BCF files It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix
- PySAM — NREL-PySAM 7. 0. 0 documentation
PySAM is a Python package for the National Renewable Energy Laboratory’s System Advisor Model (SAM) It is part of the SAM Software Development Kit (SDK), which provides tools for developers who write code that interacts with the SAM Simulation Core (SSC) application programming interface (API)
- Releases · pysam-developers pysam - GitHub
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM BAM CRAM and VCF BCF files It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix
- ( 19 ) United States ( 12 ) Patent Application Publication ( 10 ) Pub . . .
Python code for pairing DCS reads among partner strands import sys import pysam from optparse import OptionParser # This program takes as input a BAM file with DCS SMI ' s in the header , and searches for the partner SMI Reads with paired SMIS are kept Non - agreeing positions within a read are replaced with N ' s parser = OptionParser ( )
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