Redundans: no pairs aligned Does anyone know what would cause "No paris were aligned!" message during the scaffolding step in Redundans? I am running it using this command: redundans py --identity 0 70 -v -i R1 fastq R2 fastq -f contigs fa -o Results I've checked all of the documentation and the examples to see if I am missing something and I cannot pinpoint what could be
Redundans Assembly Pipeline - Biostar: S Could anyone point me in the direction of a source that explains how to use the Redundans pipeline? I have a lot of information about what it does and I downloaded it into my home directory, but oddly enough have not had any luck finding a source explaining the steps of inputting my assembled contigs