Vertebrate Annotation - Wellcome Sanger Institute The value of a genome is only as good as its annotation To create a gold standard reference annotation the Human and Vertebrate Analysis and Annotation (HAVANA) team uses tools developed in-house to manually annotate human, mouse, zebrafish and other vertebrate genomes This annotation appears in the the Vega browser
VGP repository for the genome assembly working group - GitHub The local pipeline is available for each individual step for scaffolding, polishing, and evaluation as bash scripts These scripts were used to locally assemble the first 17 genomes described in Rhie et al 2021 Note the scripts are optimized to run on a Slurm schedular and tested on Biowulf All submitter scripts have a prefix of _submit_
Three amphioxus reference genomes reveal gene and chromosome . . . species divergence time (SI Appendix, Fig S3), the hybrids contain two haploid parental genomes that have become too diverged in sequences to form cross-species chimeric assembly (SI Appendix, Fig S1) By mapping short reads derived from the respective parental species, we were able to attribute each assembled contig
About the Ensembl Project In 2009, the Ensembl Genomes project was launched with specific web portals for plant, fungal, invertebrate metazoan, bacterial and protist genomes These aim to provide taxonomic reference points giving evolutionary context in which genes can be understood, as well as coverage of all major non-vertebrate experimental organisms, species of
Human Genome Reference Sequence The scientists responsible for assembling and updating such reference sequences aim to provide the highest-quality, best possible consensus representations of the sequence and structural diversity found in the human genome among populations The genome reference sequence provides a general framework and is not the DNA sequence of a single person
Home | B10K Database - genomics The Bird 10,000 Genomes Project is now well underway on Phase 2: sequencing genomes from approximately 300 bird families and subfamilies Progress towards the ultimate goal of sequencing every avian family, genus, and eventually, species, is tracked here