AutoDock Vina AutoDock Vina is an open-source program for doing molecular docking It was originally designed and implemented by Dr Oleg Trott in the Molecular Graphics Lab (now CCSB) at The Scripps Research Institute The latest version is available here AutoDock Vina is one of the docking engines of the AutoDock Suite
AutoDock AutoDock Vina does not require choosing atom types and pre-calculating grid maps for them Instead, it calculates the grids internally, for the atom types that are needed, and it does this virtually instantly
AutoDock Suite The most advanced version of the legacy AutoDock Vina is Vina v1 1 2 (last revision: May 2011) Most of the methods and protocols for protein-ligand docking have been re-implemented with improvements in AutoDock-GPU (2021–present) and AutoDock Vina v1 2 x (2021–present)
AutoDock Vina Manual - Washington University in St. Louis AutoDock Vina significantly improves the average accuracy of the binding mode predictions compared to AutoDock 4, judging by our tests on the training set used in AutoDock 4 development
AutoDock Vina: improving the speed and accuracy of docking with a new . . . AutoDock Vina, a new program for molecular docking and virtual screening, is presented AutoDock Vina achieves an approximately two orders of magnitude speed-up compared to the molecular docking software previously developed in our lab (AutoDock 4),
Downloads – AutoDock Vina NOTE: The latest stable version of AutoDock Vina can be downloaded from the GitHub repository Older versions are available here
Basic docking — Autodock Vina 1. 2. 0 documentation - Read the Docs This is a command-line tutorial for a basic docking experiment with AutoDock-Vina It can be done on macOS, Linux, and Windows Subsystem for Linux (WSL) This tutorial uses python package Meeko for receptor and ligand preparation