equilibrator. readthedocs. io Notice that we also imported ``equilibrator_api Q_``, which is a shorthand to the ``Quantity`` object that will help us define physical values with proper units The default aqueous conditions are pH of 7 5, ionic strenght of 250 mM, and pMg of 3 You can change any or all of them by direct assignment: code-block:: python cc p_h = Q_(7 0) cc
eQuilibrator overview — equilibrator documentation eQuilibrator overview¶ equilibrator-api is a command-line API with minimal dependencies for calculation of standard thermodynamic potentials of biochemical reactions using the same data found on eQuilibrator website It can be used without a network connection (after installation and initialization)
equilibrator - Read the Docs While equilibrator-apicontains a large number of compounds drawn from different databases, it is impossible to include every possible compound you may require In the event you require to use a compound not included in the default data, the equilibrator-assetspackage provides support to generate custom compounds that can be
equilibrator_api. _version — equilibrator documentation # This file helps to compute a version number in source trees obtained from # git-archive tarball (such as those provided by githubs download-from-tag # feature) Distribution tarballs (built by setup py sdist) and build # directories (produced by setup py build) will contain a much shorter file # that just contains the computed version number # This file is released into the public domain
eQuilibrator 3. 0: a database solution for thermodynamic constant . . . See the documentation at https: equilibrator readthedocs io for more details Multi-compartment reactions The standard calculation for reaction Gibbs energies assumes that all reactants are in the same aqueous compartment, with a constant pH, pMg, ionic strength and temperature However, most genome-scale metabolic models describe more than
equilibrator_api. _version — equilibrator documentation equilibrator_api _version git_pieces_from_vcs (tag_prefix, root, verbose, run_command = run_command) [source] ¶ Get version from ‘git describe’ in the root of the source tree This only gets called if the git-archive ‘subst’ keywords were not expanded, and _version py hasn’t already been rewritten with a short version string
equilibrator_api. model — equilibrator documentation IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE from typing import Union try: from sbtab SBtab import SBtabTable, SBtabDocument